FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index15_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 23907063 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4992225 | 2.5791826 | 5.1180005 | 1 |
| GAAGA | 5076385 | 2.563604 | 5.057083 | 2 |
| CCTGG | 4979335 | 2.5593822 | 6.180095 | 1 |
| CTTCT | 5262025 | 2.5306716 | 5.4682426 | 1 |
| CTGGA | 4781340 | 2.4297843 | 8.661317 | 1 |
| TCCAG | 4714175 | 2.35588 | 5.6892986 | 2 |
| CTCCT | 4723930 | 2.309703 | 7.524666 | 1 |
| CTGGG | 4375600 | 2.2870317 | 8.40547 | 1 |
| CAGGA | 4373910 | 2.2341485 | 5.49025 | 1 |
| CTTCA | 4562980 | 2.2057462 | 5.6605864 | 1 |
| CCCAG | 4305775 | 2.1876035 | 7.350018 | 1 |
| CTCCA | 4436220 | 2.1801674 | 8.030906 | 1 |
| CAGAA | 4251310 | 2.111293 | 5.008347 | 1 |
| CTCTG | 4103455 | 2.0402014 | 6.335354 | 1 |
| CTGGC | 3654075 | 1.8781978 | 5.329537 | 1 |
| TGGAA | 3711565 | 1.8647876 | 5.1671953 | 2 |
| CTGAA | 3750375 | 1.853004 | 5.3340764 | 1 |
| CTCAG | 3494220 | 1.746215 | 6.067791 | 1 |
| CTGGT | 3267770 | 1.6521349 | 5.030016 | 1 |
| CTTGG | 3241245 | 1.6387242 | 5.3053412 | 1 |